​​​Recent Research Publications​

​PublicationsYear
​​Choga WT, Kurusa Gasenna GK, San JE, Ookame T, Gobe I, Chand M, Phafane B, Seru K, Matshosi P, Zuze B, Ndlovu N, Matsuru T, Maruapula D, Bareng OT, Macheke K, Kuate-Lere L, Tlale L, Lesetedi O, Tau M, Mbulawa MB, Smith-Lawrence P, Matshaba M, Shapiro R, Makhema J, Martin DP, de Oliveira T, Lessells RJ, Lockman S, Gaseitsiwe S, Moyo S. Rapid dynamic changes of FL.2 variant: a case report of COVID-19 breakthrough infection. International Journal of Infectious Diseases 2024 January; 138:91-96. doi: 10.1016/j.ijid.2023.11.011. PMID: 37952911. PMC10719116.
2024
​​Lustig G, Ganga Y, Rodel HE, Tegally H, Khairallah A, Jackson L, Cele S, Khan K, Jule Z, Reedoy K, Karim F,  Bernstein M, Ndung’u T, Moosa M-Y, Archary D, de Oliveira T, Lessells R, Neher RA, Abdool Karim SS, Sigal A. SARS-CoV-2 infection in immunosuppression evolves sub-lineages which independently accumulate neutralization escape mutations. Virus Evolution. 2024 January; 10(1):1-12. doi: 10.1093/ve/vead075. PMC10868398.

2024
​de Oliveira T, Baxter C. Investing in Africa's scientific future. Science. 2024 January;383(6678):eadn4168. doi: 10.1126/science.adn4168. PMID: 38175901.​2024
​Cuadros DF, Devi C, Singh U, Olivier S, Castle AC, Moosa Y, Edwards JA, Kim HY, Siedner MJ, Wong EB, Tanser F. Convergence of HIV and non-communicable disease epidemics: geospatial mapping of the unmet health needs in an HIV hyperendemic community in South Africa. BMJ Glob Health. 2024 January; 9(1):e012730. doi: 10.1136/bmjgh-2023-012730. PMC10773360.
​2024
​Carlson C, Becker D, Happi C, O'Donoghue Z, de Oliveira T, Oyola SO, Poisot T, Seifert S, Phelan A. Save lives in the next pandemic: ensure vaccine equity now. Nature. 2024 Feb;626(8001):952-953. doi: 10.1038/d41586-024-00545-3. PMID: 38396080.
​2024
​Karim F, Riou C, Bernstein M, Jule Z, Lustig G, van Graan S, Keeton RS, Upton JL, Ganga Y, Khan K, Reedoy K, Mazibuko M, Govender K, Thambu K, Ngcobo N, Venter E, Makhado Z, Hanekom W, von Gottberg A, Hoque M, Karim QA, Abdool Karim SS, Manickchund N, Magula N, Gosnell BI, Lessells RJ, Moore PL, Burgers WA, de Oliveira T, Moosa MS, Sigal A. Clearance of persistent SARS-CoV-2 associates with increased neutralizing antibodies in advanced HIV disease post-ART initiation. Nature Communications. 2024 March;15(1):2360. doi: 10.1038/s41467-024-46673-2.  PMC10943233.​
​2024
​Adeniji AA, Ayangbenro AS, Babalola OO. Draft genome sequence of Priestia megaterium AB-S79 strain isolated from active gold mine. Microbiology Resource Announcements. 2024 February; 13(2):e0105523. doi: 10.1128/mra.01055-23.PMC10868194
​2024
​Adefiranye OO, Adeniji AA, Akinjogunla OJ, Obidi OF, Oyetibo GO, Ilori MO, Babalola OO. Draft genome sequence of Staphylococcus auricularis PAPLE_T1 isolate of Carica papaya revealing biosynthetic clusters for beneficial metabolites. Microbiol Resour Announc. 2024 April; 13(4):e0120123. doi: 10.1128/mra.01201-23.  PMC11008150
​2024
​Pillay N, Mzobe GF, Letsoalo M, Kama AO, Mtshali A, Magini SN, Singh N, Govender V, Samsunder N, Naidoo M, Moodley D, Baxter C, Archary D, Ngcapu S. Performance of Softcup® menstrual cup and vulvovaginal swab samples for detection and quantification of genital cytokines. Journal of Immunological Methods. 2024 May:528:113656. doi: 10.1016/j.jim.2024.113656. PMID: 38447801
​2024
​Bezuidt OKI, Makhalanyane TP. Phylogenomic analysis expands the known repertoire of single-stranded DNA viruses in benthic zones of the South Indian Ocean. ISME Communications. 2024 May;4(1):ycae065. doi: 10.1093/ismeco/ycae065. PMC11128263
​2024
​Nair GR, Kooverjee BB, de Scally S, Cowan DA, Makhalanyane TP. Changes in nutrient availability substantially alter bacteria and extracellular enzymatic activities in Antarctic soils. FEMS Microbiology Ecology. 2024 May; 100(6):fiae071. doi: 10.1093/femsec/fiae071. PMC11107947
​2024
​Gounder L, Tomita A, Lessells R, Moodley S, Francois KL, Khan A, Pillay M, Manyana SC, Govender S, Govender K, Moodley P, Parboosing R, Msomi N, Tanser F, Naidoo K, Chimukangara B. Geospatial and temporal mapping of detectable HIV-1 viral loads amid dolutegravir rollout in KwaZulu-Natal, South Africa. PLOS Global Public Health. 2024 May;4(5):e0003224. doi: 10.1371/journal.pgph.0003224.  PMC11132473
​2024
​Ramphal U, Tshiabuila D, Ramphal Y, Giandhari J, van Heerden C, Baxter C, van Wyk S, Pillay S, Laguda-Akingba O, Wilkinson E, Lessells R, de Oliveira T. Reflective Evaluation of Next-Generation Sequencing Data during Early Phase Detection of the Delta Variant. OBM Genetics 2024 May; 8(2): 239; doi:10.21926/obm.genet.2402239.​
​2024
​​Yates TA, Cebekhulu S, Mthethwa M, Fourie PB, Newell ML, Abubakar I, Tanser F. Tuberculin skin test surveys and the Annual Risk of Tuberculous Infection in school children in Northern KwaZulu-Natal. PLOS Global Public Health. 2024 June; 4(6):e0003263. doi: 10.1371/journal.pgph.0003263. PMC11185501​.
​2024
​Mathenjwa T, Bain LE, Adeagbo O, Kim HY, Inghels M, Zuma T, Wyke S, Shahmanesh M, McGrath N, Blandford A, Matthews P, Gareta D, Yapa M, Bärnighausen T, Tanser F, Seeley J. Increasing HIV testing and linkage to care among men in rural South Africa using conditional financial incentives and a decision support app: A process evaluation. PLOS Glob Public Health. 2024 June; 4(6):e0003364. doi: 10.1371/journal.pgph.0003364.  PMC11185444.
​2024
​Nachega JB, Sam-Agudu NA, Ogoina D, Mbala-Kingebeni P, Ntoumi F, Nakouné E, Njouom R, Lewis RF, Gandhi M, Rosenthal PJ, Rawat A, Wilson LA, Kindrachuk J, Liesenborghs L, Mills EJ, Preiser W, Rimoin AW, Sullivan NJ, Peeters M, Delaporte E, Baxter C, Harrison L, Hermans MP, Mohr EL, Gonsalves G, Ndembi N, Zumla A, Muyembe-Tamfum JJ; Mpox Research Consortium. The surge of mpox in Africa: a call for action. Lancet Global Health. 2024 July ;12(7):e1086-e1088. doi: 10.1016/S2214-109X(24)00187-6. PMID: 38735300.
2024
​Chohan BH, Kingston H, Tseng AS, Sambai B, Guthrie BL, Wilkinson E, Giandhari J, Mbogo LW, Monroe-Wise A, Masyuko S, Bosire R, Ludwig-Barron NT, Sinkele W, Bukusi D, de Oliveria T, Farquhar C, Herbeck JT. Virologic Nonsuppression and HIV Drug Resistance Among People Who Inject Drugs and Their Sexual and Injecting Partners in Kenya. AIDS Res Hum Retroviruses. 2024 May;40(5):240-250. doi: 10.1089/AID.2023.0068. Epub 2024 January. PMID: 38063008.
​2024
​Sonela N, Mann J, Godwe C, Goni OH, Tchakoute M, Nkoue N, de Oliveira T, Brockman MA, Brumme ZL, Ndung’u T, Tongo M. No detectable differences in Nef-mediated downregulation of HLA-I and CD4 molecules among HIV-1 group M lineages circulating in Cameroon, where the pandemic originated. Frontiers in Virology. 2024 May; 4:1379217. https://doi.org/10.3389/fviro.2024.1379217. PMC7616105.
​2024
​Sitharam N, Tegally H, de Castro Silva D, Baxter C, de Oliveira T, Xavier JS. SARS-CoV-2 Genomic Epidemiology Dashboards: A Review of Functionality and Technological Frameworks for the Public Health Response. Genes. .  2024 July;15(7):876. doi: 10.3390/genes15070876. PMC11275337.
​2024
​Edwards JA, Brijkumar J, Dudgeon M, Robichaux C, Johnson B, Rautman L, Powers RA, Sun YV, Pillay S, Ordonez C, Castillo-Mancilla J, Tanser F, Asghar Z, Mee P, Moodley P, Sunpath H, Kuritzkes DR, Marconi VC, Moosa MS. Depression: an individual-level early warning indicator of virologic failure in HIV patients in South Africa. Public Health Action. 2024 June; 14(2):76-81. doi: 10.5588/pha.24.0017.  PMC11216289.​
​2024
​Kemp SA, Kamelian K, Cuadros DF; PANGEA Consortium; Vukuzazi Team; Cheng MTK, Okango E, Hanekom W, Ndung'u T, Pillay D, Bonsall D, Wong EB, Tanser F, Siedner MJ, Gupta RK. HIV transmission dynamics and population-wide drug resistance in rural South Africa. Nature Communications. 2024 Apr 29;15(1):3644. doi: 10.1038/s41467-024-47254-z. PMC11059351.
​2024
​Ramphal Y, Tegally H, San JE, Reichmuth ML, Hofstra M, Wilkinson E, Baxter C, CLIMADE Consortium, de Oliveira T, Moir M. Understanding the Transmission Dynamics of the Chikungunya Virus in Africa. Pathogens. 2024 July;13(7):605. doi: 10.3390/pathogens13070605. PMC11279734.
​2024
​Ismael N, Gemusse H, Mahumane I, Laurindo O, Magul C, Baxter C, Wilkinson E, Hofstra LM, Wagar N, Bila D, Mabunda N, da Silva J, Oliveira T, Raizes E, Preiser W, Manuel P, Ramos A, Vúbil A. HIV-1 pretreatment and acquired antiretroviral drug resistance before tenofovir/ lamivudine /dolutegravir (TLD) roll-out in Mozambique. BMC Infectious Diseases 2024 July;24(1):748. doi: 10.1186/s12879-024-09579-4. PMC11285440.
​2024
​Samsunder N, Sivro A, Hassan-Moosa R, Lewis L, Kara Z, Baxter C, Abdool Karim Q, Abdool Karim SS, Kharsany ABM, Naidoo K, Ngcapu S. Evaluating diagnostic accuracy of an RT-PCR test for the detection of SARS-CoV-2 in saliva. Diagnostic and Prognostic Research 2024 July;8(1):9. doi: 10.1186/s41512-024-00176-2. PMC11267770.
​2024
​Ferreira da Silva L, Alcantara LCJ, Fonseca V, Frias D, Umaki Zardin MCS, de Castro Lichs GG, Esposito AOP, Xavier J, Fritsch H, Lima M, de Oliveira C, Castilho de Arruda LD, Maziero LMA, Rodrigues Barretos EC, Tsuha Oshiro PE, Gimenes Mendes Menezes EF, de Freitas Cardoso L, Ferreira Lemos E, Lourenço J, de Albuquerque CFC, do Carmo Said RF, Rosewell A, Ferraz Demarchi LH, Croda J, Giovanetti M, Maymone Gonçalves CC. Insights into SARS-CoV-2 Surveillance among Prison Populations in Mato Grosso do Sul, Brazil, in 2022. Viruses. 2024 Jul 16;16(7):1143. doi: 10.3390/v16071143. PMC11281713.
​2024
​Moodley Y, Asare K, Tanser F, Tomita A. Maternal exposure to heat and its association with miscarriage in rural KwaZulu-Natal, South Africa: A population-based cohort study. Women's Health (Lond). 2024 July; 20:17455057241259171. doi: 10.1177/17455057241259171. PMC11282531.
​2024
​Váczy KZ, Otto M, Gomba-Tóth A, Geiger A, Golen R, Hegyi-Kaló J, Cels T, Geml J, Zsófi Z, Hegyi ÁI. Botrytis cinerea causes different plant responses in grape (Vitis vinifera) berries during noble and grey rot: diverse metabolism versus simple defence. Frontiers in Plant Science 2024 Aug 6;15:1433161. doi: 10.3389/fpls.2024.1433161. PMC11333459.
​2024
​Hill V, Cleemput S, Fonseca V, Tegally H, Brito AF, Gifford R, Tran VT, Kien DTH, Huynh T, Yacoub S, Dieng I, Ndiaye M, Balde D, Diagne MM, Faye O, Salvato R, Wallau GL, Gregianini TS, Godinho FMS, Vogels CBF, Breban MI, Leguia M, Jagtap S, Roy R, Hapuarachchi C, Mwanyika G, Giovanetti M, Alcantara LCJ, Faria NR, Carrington CVF, Hanley KA, Holmes EC, Dumon W, de Oliveira T, Grubaugh ND. A new lineage nomenclature to aid genomic surveillance of dengue virus. PLoS Biology 2024 September;22(9):e3002834. doi: 10.1371/journal.pbio.3002834.
​2024
​Subissi L, Otieno JR, Worp N, Attar Cohen H, Oude Munnink BB, Abu-Raddad LJ, Alm E, Barakat A, Barclay WS, Bhiman JN, Caly L, Chand M, Chen M, Cullinane A, de Oliveira T, Drosten C, Druce J, Effler P, El Masry I, Faye A, Ghedin E, Grant R, Haagmans BL, Happi C, Herring BL, Hodcroft EB, Ikejezie J, Katawera V, Kassamali ZA, Leo YS, Leung GM, Kondor RJ, Marklewitz M, Mendez-Rico J, Melhem NM, Munster V, Nahapetyan K, Naindoo D, Oh DY, Peacock TP, Peiris M, Peng Z, Poon LLM, Rambaut A, Saha S, Shen Y, Siqueira MM, Volz E, Tessema SK, Thiel V, Triki H, van der Werf S, von Eije K, Cunningham J, Koopmans MPG, von Gottberg A, Agrawal A, Van Kerkhove MD. An updated framework for SARS-CoV-2 variants reflects the unpredictability of viral evolution. Nature Medicine. 2024 September;30(9):2400-2403. doi: 10.1038/s41591-024-02949-0 PMID: 38720002.
2024​
​Tsui JL, Pena RE, Moir M, Inward RP, Wilkinson E, San JE, Poongavanan J, Bajaj S, Gutierrez B, Dasgupta A, de Oliveira T, Kraemer M, Tegally H, Sambaturu P.  Impacts of climate change-related human migration on infectious diseases. Nature Climate Change. 2024 August; 14:73-802. doi: 10.1038/s41558-024-02078-z.
​2024
​de Oliveira T. The third era of genomics is at risk of being dismantled across the global south. Science. 2024 October;386(6718):eadt4843. doi: 10.1126/science.adt4843. PMID: 39388540.
​2024
​Godwe C, Goni OH, San JE, Sonela N, Tchakoute M, Nanfack A, Koro FK, Butel C, Vidal N, Duerr R, Martin DP, de Oliveira T, Peeters M, Altfeld M, Ayouba A, Ndung'u T, Tongo M. Phylogenetic evidence of extensive spatial mixing of diverse HIV-1 group M lineages within Cameroon but not between its neighbours. Virus Evolution. 2024 Sep;10(1):veae070. doi: 10.1093/ve/veae070. PMC11463025.
​2024
​Davidović M, Asangbeh SL, Taghavi K, Dhokotera T, Jaquet A, Musick B, Van Schalkwyk C, Schwappach D, Rohner E, Murenzi G, Wools-Kaloustian K, Anastos K, Omenge OE, Boni SP, Duda SN, von Groote P, Bohlius J; International Epidemiology Databases to Evaluate AIDS. Facility-Based Indicators to Manage and Scale Up Cervical Cancer Prevention and Care Services for Women Living With HIV in Sub-Saharan Africa: a Three-Round Online Delphi Consensus Method. JAIDS. 2024 February; 95(2):170-178. doi: 10.1097/QAI.0000000000003343. PMC10794028.
​2024
​Vermeulen M, Mhlanga L, Sykes W, Cable R, Coleman C, Pietersen N, Swanevelder R, Glatt TN, Bingham J, van den Berg K, Grebe E, Welte A. The evolution and interpretation of seroprevalence of SARS-CoV-2 antibodies among South African blood donors from the Beta to Omicron variant-driven waves. Vox Sanguinis impact factor. 2024 Mar;119(3):242-251. doi: 10.1111/vox.13571. Epub 2023 Dec 29. PMID: 38156504.
​2024
​van Schalkwyk C, Mahy M, Johnson LF, Imai-Eaton JW. Updated Data and Methods for the 2023 UNAIDS HIV Estimates. J Acquir Immune Defic Syndr. 2024 Jan 1;95(1S):e1-e4. doi: 10.1097/QAI.0000000000003344. Epub 2024 Jan 4. PMC10769173.
​2024
​Johnson LF, Myer L, Jamieson L, Meyer-Rath G, Delany-Moretlwe S, Joseph Davey D. The potential benefits of long-acting injectable cabotegravir in pregnant and breastfeeding women and their infants. AIDS. 2024 March;38(4):589-594. doi: 10.1097/QAD.0000000000003803.PMC10906189.
​2024
​Engels EA, Shiels MS, Barnabas RV, Bohlius J, Brennan P, Castilho J, Chanock SJ, Clarke MA, Coghill AE, Combes JD, Dryden-Peterson S, D'Souza G, Gopal S, Jaquet A, Lurain K, Makinson A, Martin J, Muchengeti M, Newton R, Okuku F, Orem J, Palefsky JM, Ramaswami R, Robbins HA, Sigel K, Silver S, Suneja G, Yarchoan R, Clifford GM. State of the science and future directions for research on HIV and cancer: Summary of a joint workshop sponsored by IARC and NCI. International Journal of Cancer. 2024 Feb;154(4):596-606. doi: 10.1002/ijc.34727. PMID: 37715370.
​2024
​Dhokotera TG, Muchengeti M, Davidović M, Rohner E, Olago V, Egger M, Bohlius J. Gynaecologic and breast cancers in women living with HIV in South Africa: A record linkage study. International Journal of Cancer. 2024 January; 154(2):284-296. doi: 10.1002/ijc.34712. PMC10884939.
​2024
​Murayama H, Pearson CAB, Abbott S, Miura F, Jung SM, Fearon E, Funk S, Endo A. Accumulation of Immunity in Heavy-Tailed Sexual Contact Networks Shapes Mpox Outbreak Sizes.Journal of Infectious Diseases. 2024 January; 229(1):59-63. doi: 10.1093/infdis/jiad254. PMC10786257.
​2024
​Rautenbach SP, Whittles LK, Meyer-Rath G, Jamieson L, Chidarikire T, Johnson LF, Imai-Eaton JW. Future HIV epidemic trajectories in South Africa and projected long-term consequences of reductions in general population HIV testing: a mathematical modelling study. Lancet Public Health. 2024 Apr;9(4):e218-e230. doi: 10.1016/S2468-2667(24)00020-3. PMC11000585.
​2024
​Adetokunboh OO, Are EB. Spatial distribution and determinants of HIV high burden in the Southern African sub-region. PLoS One. 2024 April; 19(4):e0301850. doi: 10.1371/journal.pone.0301850. PMC11051620.
​2024
​Sherratt K, Carnegie AC, Kucharski A, Cori A, Pearson CAB, Jarvis CI, Overton C, Weston D, Hill EM, Knock E, Fearon E, Nightingale E, Hellewell J, Edmunds WJ, Villabona Arenas J, Prem K, Pi L, Baguelin M, Kendall M, Ferguson N, Davies N, Eggo RM, van Elsland S, Russell T, Funk S, Liu Y, Abbott S. Improving modelling for epidemic responses: reflections from members of the UK infectious disease modelling community on their experiences during the COVID-19 pandemic. Wellcome Open Research. 2024 January; 9:12. doi: 10.12688/wellcomeopenres.19601.1. PMC11112301.
​2024
​Singini MG, Muchengeti M, Sitas F, Chen WC, Combes JD, Waterboer T, Clifford GM. Antibodies against high-risk human papillomavirus proteins as markers for noncervical HPV-related cancers in a Black South African population, according to HIV status. International Journal of Cancer. 2024 July; 155(2):251-260. doi: 10.1002/ijc.34919.
​2024
​Vale GA, Hargrove JW, Hope A, Torr SJ. Modelled impact of Tiny Targets on the distribution and abundance of riverine tsetse. PLOS Neglected Tropical Diseases 2024 April; 18(4):e0011578. doi: 10.1371/journal.pntd.0011578. PMCID: PMC11051647.
​2024
​Edoka I, Silal S, Jamieson L, Meyer-Rath G. A cost-effectiveness analysis of South Africa's COVID-19 vaccination programme. Vaccine. 2024 Aug;42(20):125988. doi: 10.1016/j.vaccine.2024.05.036. Epub 2024 May 31. PMID: 38824084.
​2024
​Lima VD, Zhu J, Barrios R, Toy J, Joy JB, Williams BG, Granich R, Wu Z, Wong J, Montaner JSG. Longitudinal evolution of the HIV effective reproduction number following sequential expansion of treatment as prevention and pre-exposure prophylaxis in British Columbia, Canada: a population-level programme evaluation. Lancet HIV. 2024 Jul;11(7):e461-e469. doi: 10.1016/S2352-3018(24)00094-8. PMID: 38848736.
​2024
​Nawa M, Mupeyo-Mudala C, Banda-Tembo S, Adetokunboh O. The effects of modern housing on malaria transmission in different endemic zones: a systematic review and meta-analysis. Malaria Journal. 2024 August;23(1):235. doi: 10.1186/s12936-024-05059-x. PMC11308589.
​2024
​Odeny TA, Fink V, Muchengeti M, Gopal S. Cancer in People with HIV. Infectious Disease Clinics of North America 2024 Sep;38(3):531-557. doi: 10.1016/j.idc.2024.06.007. PMID: 39111924.
​2024
Masuku SD, Brennan AT, Vetter B, Venter F, Mtshazo B, Sokhela S, Mashabane N, Kao K, Meyer-Rath G. The cost of adding rapid screening for diabetes, hypertension, and COVID-19 to COVID-19 vaccination queues in Johannesburg, South Africa. BMC Public Health. 2024 July;24(1):1900. doi: 10.1186/s12889-024-19253-8.  PMC11251297.
​2024
​Broger T, Marx FM, Theron G, Marais BJ, Nicol MP, Kerkhoff AD, Nathavitharana R, Huerga H, Gupta-Wright A, Kohli M, Nichols BE, Muyoyeta M, Meintjes G, Ruhwald M, Peeling RW, Pai NP, Pollock NR, Pai M, Cattamanchi A, Dowdy DW, Dewan P, Denkinger CM. Diagnostic yield as an important metric for the evaluation of novel tuberculosis tests: rationale and guidance for future research. Lancet Global Health. 2024 July;12(7):e1184-e1191. doi: 10.1016/S2214-109X(24)00148-7. PMID: 38876764.
​2024
​Hladish TJ, Pillai AN, Pearson CAB, Toh KB, Tamayo AC, Stoltzfus A, Longini IM. Evaluating targeted COVID-19 vaccination strategies with agent-based modeling. PLoS Computational Biology. 2024 May 31;20(5):e1012128. doi: 10.1371/journal.pcbi.1012128. PMID: 38820570; PMCID: PMC11230632.
​2024
​Olago V, Nimako G, Bartels L, Bohlius J, Dhokotera T, Egger M, Singh E, Sengayi-Muchengeti M. Cancer diagnostic service use in people living with HIV in South Africa: A cross-sectional study. PLoS One. 2024 June;19(6):e0291897. doi: 10.1371/journal.pone.0291897. PMID: 38870151; PMCID: PMC11175394.
​2024
Pillai AN, Toh KB, Perdomo D, Bhargava S, Stoltzfus A, Longini IM Jr, Pearson CAB, Hladish TJ. Agent-based modeling of the COVID-19 pandemic in Florida. Epidemics. 2024 June;47:100774. doi: 10.1016/j.epidem.2024.100774. PMCID: PMC11197045.
​2024
​Oduaran OH, Foláyan MO, Kamng'ona AW, Nakimuli A, Mwapagha LM, Setati ME, Owusu M, Mulder N, Makhalanyane TP, Kouidhi S. Microbiome research in Africa must be based on equitable partnerships. Nature Medicine. 2024 May 23. doi: 10.1038/s41591-024-03026-2. Epub ahead of print. PMID: 38783138.
​2024
​Gumbs SBH, Stam AJ, Mudrikova T, Schipper PJ, Hoepelman AIM, van Ham PM, Borst AL, Hofstra L, Gharu L, van Wyk S, Wilkinson E, de Witte LD, Wensing AMJ, Nijhuis M. Characterization of HIV variants from paired Cerebrospinal fluid and Plasma samples in primary microglia and CD4+ T-cells. Journal of NeuroVirology. 2024 May. doi: 10.1007/s13365-024-01207-w. Epub ahead of print. PMID: 38713307.
​​2024
​Vakaniaki EH, Kacita C, Kinganda-Lusamaki E, O'Toole Á, Wawina-Bokalanga T, Mukadi-Bamuleka D, Amuri-Aziza A, Malyamungu-Bubala N, Mweshi-Kumbana F, Mutimbwa-Mambo L, Belesi-Siangoli F, Mujula Y, Parker E, Muswamba-Kayembe PC, Nundu SS, Lushima RS, Makangara-Cigolo JC, Mulopo-Mukanya N, Pukuta-Simbu E, Akil-Bandali P, Kavunga H, Abdramane O, Brosius I, Bangwen E, Vercauteren K, Sam-Agudu NA, Mills EJ, Tshiani-Mbaya O, Hoff NA, Rimoin AW, Hensley LE, Kindrachuk J, Baxter C, de Oliveira T, Ayouba A, Peeters M, Delaporte E, Ahuka-Mundeke S, Mohr EL, Sullivan NJ, Muyembe-Tamfum JJ, Nachega JB, Rambaut A, Liesenborghs L, Mbala-Kingebeni P. Sustained Human Outbreak of a New MPXV Clade I Lineage in the Eastern Democratic Republic of the Congo.Nature Medicine. 2024 June. doi: 10.1038/s41591-024-03130-3. Epub ahead of print. PMID: 38871006​.
​2024
​Kim HY, Inghels M, Mathenjwa T, Shahmanesh M, Seeley J, Matthews P, Wyke S, McGrath N, Adeagbo O, Gareta D, Yapa HM, Zuma T, Dobra A, Blandford A, Bärnighausen T, Tanser F. Effect of a Male-Targeted Digital Decision Support Application Aimed at Increasing Linkage to HIV Care Among Men: Findings from the HITS Cluster Randomized Clinical Trial in Rural South Africa. AIDS Behav. 2024 September. doi: 10.1007/s10461-024-04465-1. Epub ahead of print. PMID: 39259239.
​2024
​Cella E, Fonseca V, Branda F, Tosta S, Moreno K, Schuab G, Ali S, Slavov SN, Scarpa F, Santos LA, Kashima S, Wilkinson E, Tegally H, Mavian C, Borsetti A, Caccuri F, Salemi M, de Oliveira T, Azarian T, de Filippis AMB, Alcantara LCJ, Ceccarelli G, Caruso A, Colizzi V, Marcello A, Lourenço J, Ciccozzi M, Giovanetti M. Integrated analyses of the transmission history of SARS-CoV-2 and its association with molecular evolution of the virus underlining the pandemic outbreaks in Italy, 2019-2023. International Journal of Infectious Diseases. 2024 Oct 8:107262. doi: 10.1016/j.ijid.2024.107262. Epub ahead of print. PMID: 39389289.
​2024
​Leong TD, Nel J, Jamieson L, Osih R, Dawood H, Subedar H, McCaul M, Johnson LF, Cohen K. A review and economic analysis of the dapivirine vaginal ring as HIV pre-exposure prophylaxis for women, to inform South African public-sector guidelines. JAIDS. 2024 July. doi: 10.1097/QAI.0000000000003496. Epub ahead of print. PMID: 39051791.
​2024
​Zuniga JM, Prachniak C, Policek N, Magula N, Gandhi A, Anderson J, Diallo DD, Lima VD, Ravishankar S, Acharya S, Achrekar A, Adeleke M, Aïna É, Baptiste S, Barrow G, Begovac J, Bukusi E, Castel A, Castellanos E, Cestou J, Chirambo G, Crowley J, Dedes N, Ditiu L, Doherty M, Duncombe C, Durán A, Futterman D, Hader S, Kounkeu C, Lawless F, Lazarus JV, Lex S, Lobos C, Mayer K, Mejia M, Moheno HR, d'Arminio Monforte A, Morán-Arribas M, Nagel D, Ndugwa R, Ngunu C, Poonkasetwattana M, Prins M, Quesada A, Rudnieva O, Ruth S, Saavedra J, Toma L, Wanjiku Njenga L, Williams B. IAPAC-Lancet HIV Commission on the future of urban HIV responses. Lancet HIV. 2024 July. doi: 10.1016/S2352-3018(24)00124-3. Epub ahead of print. PMID: 39043198.
​2024
​Avelino-Silva VI, Bruhn R, Zurita KG, Deng X, Yu EA, Grebe E, Stone M, Lanteri MC, Spencer BR, Busch MP, Custer B. SARS-CoV-2 antibody levels and long COVID occurrence in blood donors. Transfusion. 2024 July. doi: 10.1111/trf.17952. Epub ahead of print. PMID: 38984497.
​2024
Venter WDF, Gandhi M, Sokhela S, Sikwese K, Bygrave H, Gama LD, Mphothulo N, Jamieson L, Siedner MJ, Pozniak A, Rojo P, Baptiste SL, Wambui J, Meyer-Rath G, Honerman B, Warren M, Gayle-Bekker L, Sinxadi P, Collins S, Burry J, Möller K, Clayden P, Owen A, Hill A. The long wait for long-acting HIV prevention and treatment formulations. Lancet HIV. 2024 Aug 16:S2352-3018(24)00173-5. doi: 10.1016/S2352-3018(24)00173-5. Epub ahead of print.
​2024
​Maponga TG, Jeffries M, Tegally H, Sutherland A, Wilkinson E, Lessells R, Msomi N, van Zyl G, de Oliveira T, Preiser W. Persistent Severe Acute Respiratory Syndrome Coronavirus 2 Infection With accumulation of mutations in a patient with poorly controlled Human Immunodeficiency Virus infection. Clinical infectious diseases. 2023 Feb;76(3):e522-e525. doi: 10.1093/cid/ciac548. PMC9278209.
​2023​
​Nachega JB, Nsanzimana S, Rawat A, Wilson LA, Rosenthal PJ, Siedner MJ, Varma JK, Kilmarx PH, Mutesa L, Tanner M, Binagwaho A, Forrest J, Mbala-Kingebeni P, Muyembe-Tamfum J-J, Ntoumi F, Zumla A, de Oliveira T, Mills EJ. Advancing detection and response capacities for emerging and re-emerging pathogens in Africa. Lancet Infectious Diseases 2023 May;23(5):e185-e189. doi: 10.1016/S1473-3099(22)00723-X. PMC10023168.
​2023
​Xavier J, Moir M, Tegally H, Sitharam N; Abdool Karim W, San JE, Linhares J, Wilkinson E, Ascher D, Baxter C, Pires D, de Oliveira T. SARS-CoV-2 Africa dashboard for real-time COVID-19 information. Nature Microbiology 2023 Jan;8(1):1-4. doi: 10.1038/s41564-022-01276-9. PMC10040187.
​2023
​Ulaeto D, Agafonov A, Burchfield J, Carter L, Happi C, Jakob R, Krpelanov E, Kuppalli K, Lefkowitz E, Mauldin M, de Oliveira  T, Onoja B, Otieno J, Rambaut A, Subissi L, Yinka-Ogunleye A, Lewis RF. New nomenclature for mpox (monkeypox) and monkeypox virus clades. The Lancet Infectious Diseases. 2023;23(3):273–275. PMC9901940,
​2023
​Sisay A, Tshiabuila D, van Wyk S, Tesfaye A, Mboowa G, Oyola SO, Tesema SK, Baxter C, Martin D, Lessells R, Tegally H, Moir M, Giandhari J, Pillay S, Singh L, Ramphal Y, Maharaj A, Pillay Y, Maharaj A, Naidoo Y, Ramphal U, Chabuka L, Wilkinson E, de Oliveira T, Desta AF, San JE. Molecular Epidemiology and Diversity of SARS-CoV-2 in Ethiopia, 2020–2022. Genes 2023 Mar;14(3):705. doi: 10.3390/genes14030705. PMC10047986.
​2023
​Ismael N, van Wyk S, Tegally H, Giandhari J, San JE, Moir M, Pillay S, Utpatel C, Singh L, Naidoo Y, Ramphal U, Mabunda N, Abílio N, Arnaldo P, Xavier J, Amoako DG, Everatt J, Ramphal Y, Maharaj A, de Araujo L, Anyaneji UJ, Tshiabuila D, Viegas S, Lessells R, Engelbrecht S, Gudo E, Jani I, Niemann S, Wilkinson E, de Oliveira T. Genomic epidemiology of SARS-CoV-2 during the first four waves in Mozambique. PLOS Global Public Health 2023 Mar;3(3):e0001593. doi: 10.1371/journal.pgph.0001593. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10021167/
​2023
​Mvelase NR, Cele LP, Singh R, Naidoo Y, Giandhari J, Wilkinson E, de Oliveira T, Swe-Han KS, Mlisana KP. Consequences of rpoB mutations missed by the GenoType MTBDRplus assay in a programmatic setting in South Africa. African Journal of Laboratory Medicine 2023 Feb;12(1):1975. doi: 10.4102/ajlm.v12i1.1975. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9982466/
​2023​
​Pillay S, San JE, Tshiabuila D, Naidoo Y, Pillay Y, Maharaj A, Anyaneji UJ, Wilkinson E, Tegally H, Lessells RJ, Baxter C, de Oliveira T, Giandhari J. Evaluation of miniaturized Illumina DNA preparation protocols for SARS-CoV-2 whole genome sequencing. PLoS One. 2023 April;18(4):e0283219. doi: 10.1371/journal.pone.0283219. PMC10132692.
​2023
​Mahomed S, Garrett N, Capparelli EV, Osman F, Mkhize NN, Harkoo I, Gengiah TN, Mansoor LE, Baxter C, Archary D, Yende-Zuma N, Samsunder N, Carlton K, Narpala S, McDermott AB, Doria-Rose NA, Moore PL, Morris L, Abdool Karim Q, Mascola JR, Abdool Karim SS. Safety and pharmacokinetics of escalating doses of neutralising monoclonal antibody CAP256V2LS administered with and without VRC07-523LS in HIV-negative women in South Africa (CAPRISA 012B): a phase 1, dose-escalation, randomised controlled trial. Lancet HIV. 2023 Apr;10(4):e230-e243. doi: 10.1016/S2352-3018(23)00003-6. https://pubmed.ncbi.nlm.nih.gov/37001964/
​2023
​Koen AL, Izu A, Baillie V, Kwatra G, Cutland CL, Fairlie L, Padayachee SD, Dheda K, Barnabas SL, Bhorat QE, Briner C, Ahmed K, Bhikha S, Bhiman JN, du Plessis J, Esmail A, Horne E, Hwa SH, Oommen-Jose A, Lambe T, Laubscher M, Malahleha M, Benade G, McKenzie S, Oelofse S, Patel F, Pillay S, Rhead S, Rodel H, Taoushanis C, Tegally H, Thombrayil A, Villafana TL, Gilbert S, Pollard AJ, Madhi SA. Efficacy of primary series AZD1222 (ChAdOx1 nCoV-19) vaccination against SARS-CoV-2 variants of concern: Final analysis of a randomized, placebo-controlled, phase 1b/2 study in South African adults (COV005). Vaccine. 2023 May;41(23):3486-3492. doi: 10.1016/j.vaccine.2023.04.058.  PMC10133888.
​2023
​Subramoney K, Mtileni N, Giandhari J, Naidoo Y, Ramphal Y, Pillay S, Ramphal U, Maharaj A, Tshiabuila D, Tegally H, Wilkinson E, de Oliveira T, Fielding BC, Treurnicht FK. Molecular Epidemiology of SARS-CoV-2 during Five COVID-19 Waves and the Significance of Low-Frequency Lineages. Viruses. 2023 May; 15(5):1194. doi: 10.3390/v15051194. PMC10223853.
​2023
​Subramoney K, Mtileni N, Davis A, Giandhari J, Tegally H, Wilkinson E, Naidoo Y, Ramphal Y, Pillay S, Ramphal U, Simane A, Reddy B, Mashishi B, Mbenenge N, de Oliveira T, Fielding BC, Treurnicht FK. SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022. PLoS One. 2023 May;18(5):e0286373. doi: 10.1371/journal.pone.0286373. PMC10228762.
​2023
​Samsunder N, Lustig G, de Vos M, Ngcapu S, Giandhari J, Tshiabuila D, San EJ, Lewis L, Kharsany AB, Cawood C, de Oliveira T, Abdool Karim Q, Abdool Karim S, Escadafal C, Naidoo K, Sivro A. Performance of rapid antigen tests in identifying Omicron BA.4 and BA.5 infections in South Africa. Journal of Clinical Virology 2023 June;165:105498. doi: 10.1016/j.jcv.2023.105498. PMC10236920
​2023
​Anoh EA, Wayoro O, Monemo P, Belarbi E, Sachse A, Wilkinson E, San JE, Leendertz FH, Diané B, Calvignac-Spencer S, Akoua-Koffi C, Schubert G. Subregional origins of emerging SARS-CoV-2 variants during the second pandemic wave in Côte d'Ivoire. Virus Genes. 2023 Jun;59(3):370-376. doi: 10.1007/s11262-023-01984-2. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10023306/
​2023
​Kim HY, Rohr J, Leyna GH, Killewo J, Tomita A, Tanser F, Bärnighausen T. High prevalence of self-reported sexually transmitted infections among older adults in Tanzania: results from a list experiment in a population-representative survey. Annals of Epidemiology. 2023 Aug;84:48-53. doi: 10.1016/j.annepidem.2023.05.001. PMID: 37201669.
​2023
​Giovanetti M, Vazquez C, Lima M, Castro E, Rojas A, Gomez de la Fuente A, Aquino C, Cantero C, Fleitas F, Torales J, Barrios J, Ortega MJ, Gamarra ML, Villalba S, Alfonzo T, Xavier J, Adelino T, Fritsch H, Iani FCM, Pereira GC, de Oliveira C, Schuab G, Rodrigues ES, Kashima S, Leite J, Gresh L, Franco L, Tegally H, Van Voorhis WC, Lessels R, de Filippis AMB, Ojeda A, Sequera G, Montoya R, Holmes EC, de Oliveira T, Rico JM, Lourenço J, Fonseca V, Alcantara LCJ. Rapid Epidemic Expansion of Chikungunya Virus East/Central/South African Lineage, Paraguay. Emerging Infectious Diseases. 2023 Sep;29(9):1859-1863. doi: 10.3201/eid2909.230523. PMC10461647.
​2023
​Tegally H, Wilkinson E, Tsui JL, Moir M, Martin D, Brito AF, Giovanetti M, Khan K, Huber C, Bogoch II, San JE, Poongavanan J, Xavier JS, Candido DDS, Romero F, Baxter C, Pybus OG, Lessells RJ, Faria NR, Kraemer MUG, de Oliveira T. Dispersal patterns and influence of air travel during the global expansion of SARS-CoV-2 variants of concern. Cell. 2023 Jul 20;186(15):3277-3290.e16. doi: 10.1016/j.cell.2023.06.001. PMID: 37413988; PMCID: PMC10247138.
​2023
​Tsui JL, McCrone JT, Lambert B, Bajaj S, Inward RPD, Bosetti P, Pena RE, Tegally H, Hill V, Zarebski AE, Peacock TP, Liu L, Wu N, Davis M, Bogoch II, Khan K, Kall M, Abdul Aziz NIB, Colquhoun R, O'Toole Á, Jackson B, Dasgupta A, Wilkinson E, de Oliveira T; COVID-19 Genomics UK (COG-UK) consortium¶; Connor TR, Loman NJ, Colizza V, Fraser C, Volz E, Ji X, Gutierrez B, Chand M, Dellicour S, Cauchemez S, Raghwani J, Suchard MA, Lemey P, Rambaut A, Pybus OG, Kraemer MUG. Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1. Science. 2023 July;381(6655):336-343. doi: 10.1126/science.adg6605.  PMID: 37471538.
​2023
​Poongavanan J, Xavier J, Dunaiski M, Tegally H, Oladejo SO, Ayorinde O, Wilkinson E, Baxter C, de Oliveira T. Managing and assembling population-scale data streams, tools and workflows to plan for future pandemics within the INFORM-Africa Consortium. South African Journal of Science. 2023 Jun;119(5-6):1-4. doi: 10.17159/sajs.2023/14659.
​2023
​Makofane K, Kim HY, Tchetgen Tchetgen E, Bassett MT, Berkman L, Adeagbo O, McGrath N, Seeley J, Shahmanesh M, Yapa HM, Herbst K, Tanser F, Bärnighausen T. Impact of family networks on uptake of health interventions: evidence from a community-randomized control trial aimed at increasing HIV testing in South Africa. Journal of the International AIDS Society. 2023 Aug;26(8):e26142. doi: 10.1002/jia2.26142.  PMC10440100.
​2023
​Giovanetti M, Pinotti F, Zanluca C, Fonseca V, Nakase T, Koishi AC, Tscha M, Soares G, Dorl GG, Marques AEML, Sousa R, Adelino TER, Xavier J, de Oliveira C, Patroca S, Guimaraes NR, Fritsch H, Mares-Guia MA, Levy F, Passos PH, da Silva VL, Pereira LA, Mendonça AF, de Macêdo IL, Ribeiro de Sousa DE, Rodrigues de Toledo Costa G, Botelho de Castro M, de Souza Andrade M, de Abreu FVS, Campos FS, Iani FCM, Pereira MA, Cavalcante KRLJ, de Freitas ARR, Campelo de Albuquerque CF, Macário EM, Dos Anjos MPD, Ramos RC, Campos AAS, Pinter A, Chame M, Abdalla L, Riediger IN, Ribeiro SP, Bento AI, de Oliveira T, Freitas C, Oliveira de Moura NF, Fabri A, Dos Santos Rodrigues CD, Dos Santos CC, Barreto de Almeida MA, Dos Santos E, Cardoso J, Augusto DA, Krempser E, Mucci LF, Gatti RR, Cardoso SF, Fuck JAB, Lopes MGD, Belmonte IL, Mayoral Pedroso da Silva G, Soares MRF, de Castilhos MMS, de Souza E Silva JC, Bisetto Junior A, Pouzato EG, Tanabe LS, Arita DA, Matsuo R, Dos Santos Raymundo J, Silva PCL, Santana Araújo Ferreira Silva A, Samila S, Carvalho G, Stabeli R, Navegantes W, Moreira LA, Ferreira AGA, Pinheiro GG, Nunes BTD, de Almeida Medeiros DB, Cruz ACR, Venâncio da Cunha R, Van Voorhis W, Bispo de Filippis AM, Almiron M, Holmes EC, Ramos DG, Romano A, Lourenço J, Alcantara LCJ, Duarte Dos Santos CN. Genomic epidemiology unveils the dynamics and spatial corridor behind the Yellow Fever virus outbreak in Southern Brazil. Science Advances 2023 September;9(35):eadg9204. doi: 10.1126/sciadv.adg9204. PMID: 37656782.
​2023
​de Oliveira T, Tegally H. Will climate change amplify epidemics and give rise to pandemics? Science. 2023 Aug;381(6660):eadk4500. doi: 10.1126/science.adk4500. PMID: 37616383.
​2023
​Mngadi LC, Cuadros DF, Tanser F, Burns JK, Slotow R, Tomita A. Water, sanitation and depression in rural communities: evidence from nationally representative study data in South Africa. Psychology, Health and Medicine 2023 Jul-Dec;28(9):2441-2449. doi: 10.1080/13548506.2023.2179643. https://pubmed.ncbi.nlm.nih.gov/36821547/
​2023
​Francisco NM, van Wyk S, Moir M, San JE, Sebastião CS, Tegally H, Xavier J, Maharaj A, Neto Z, Afonso P, Jandondo D, Paixão J, Miranda J, David K, Inglês L, Pereira A, Paulo A, Carralero RR, Freitas HR, Mufinda F, Lutucuta S, Ghafari M, Giovanetti M, Giandhari J, Pillay S, Naidoo Y, Singh L, Tshiabuila D, Martin DP, Chabuka L, Choga W, Wanjohi D, Mwangi S, Pillay Y, Kebede Y, Shumba E, Ondoa P, Baxter C, Wilkinson E, Tessema SK, Katzourakis A, Lessells R, de Oliveira T, Morais J. Insights into SARS-CoV-2 in Angola during the COVID-19 peak: Molecular epidemiology and genome surveillance. Influenza and Other Respiratory Viruses. 2023 Sep 22;17(9):e13198. doi: 10.1111/irv.13198. PMC10515134.
​2023
​Mavian CN, Tagliamonte MS, Alam MT, Sakib SN, Cash MN, Moir M, Jimenez JP, Riva A, Nelson EJ, Cato ET, Ajayakumar J, Louis R, Curtis A, De Rochars VMB, Rouzier V, Pape JW, de Oliveira T, Morris JG Jr, Salemi M, Ali A. Ancestral Origin and Dissemination Dynamics of Reemerging Toxigenic Vibrio cholerae, Haiti. Emerging Infectious Diseases. 2023 Oct;29(10):2072-2082. doi: 10.3201/eid2910.230554. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10521621/
​2023
​Singh U, Olivier S, Cuadros D, Castle A, Moosa Y, Zulu T, Edwards JA, Kim HY, Gunda R, Koole O, Surujdeen A, Gareta D, Munatsi D, Modise TH, Dreyer J, Nxumalo S, Smit TK, Ordering-Jespersen G, Mpofana IB, Khan K, Sikhosana ZEL, Moodley S, Shen YJ, Khoza T, Mhlongo N, Bucibo S, Nyamande K, Baisley KJ, Grant AD, Herbst K, Seeley J, Pillay D, Hanekom W, Ndung'u T, Siedner MJ, Tanser F, Wong EB; Vukuzazi team. The met and unmet health needs for HIV, hypertension, and diabetes in rural KwaZulu-Natal, South Africa: analysis of a cross-sectional multimorbidity survey. Lancet Global Health. 2023 Sept;11(9):e1372-e1382. doi: 10.1016/S2214-109X(23)00239-5. PMCID: PMC10447220.
​2023
​Cuadros DF, Moreno CM, Tomita A, Singh U, Olivier S, Castle A, Moosa Y, Edwards JA, Kim HY, Siedner MJ, Wong EB, Tanser F. Geospatial assessment of the convergence of communicable and non-communicable diseases in South Africa. Journal of Multimorbidity and Comorbidity 2023 Sept;13:1-12. doi: 10.1177/26335565231204119.  PMC10540575.
​2023
​Inghels M, Mee P, Diallo OH, Cissé M, Nelson D, Tanser F, Asghar Z, Koita Y, Laborde-Balen G, Breton G. Improving early infant diagnosis for HIV-exposed infants using unmanned aerial vehicles for blood sample transportation in Conakry, Guinea: a comparative cost-effectiveness analysis. BMJ Global Health. 2023 Nov;8(11):e012522. doi: 10.1136/bmjgh-2023-012522. PMC10660963.
​2023
​Qulu WP, Mzobe G, Mtshali A, Letsoalo MP, Osman F, San JE, Kama AO, Garrett N, Mindel A, Rompalo A, Liebenberg LJP, Archary D, Sivro A, Ngcapu S. Metronidazole Treatment Failure and Persistent BV Lead to Increased Frequencies of Activated T- and Dendritic-Cell Subsets. Microorganisms. 2023 Oct 27;11(11):2643. doi: 10.3390/microorganisms11112643. PMC10673474.
​2023
​Moore H, Hill B, Emery J, Gussy M, Siriwardena AN, Spaight R, Tanser F. An early warning precision public health approach for assessing COVID-19 vulnerability in the UK: the Moore-Hill Vulnerability Index (MHVI). BMC Public Health. 2023 November; 23(1):2147. doi: 10.1186/s12889-023-17092-7. PMC10623819.
​2023
​Abaasa A, Mee P, Nanyonjo A, Easton S, Tanser F, Asiki G. Feasibility and acceptability of using biometric fingerprinting to track migrations and support retention in HIV prevention research in fishing population in East Africa. BMC Public Health. 2023 December;23(1):2383. doi: 10.1186/s12889-023-17339-3. PMC10691076.
​2023
​Qulu W, Mtshali A, Osman F, Ndlela N, Ntuli L, Mzobe G, Naicker N, Garrett N, Rompalo A, Mindel A, Ngcapu S, Liebenberg L. High-risk human papillomavirus prevalence among South African women diagnosed with other STIs and BV. PLoS One. 2023 November;18(11):e0294698. doi: 10.1371/journal.pone.0294698. PMC10688634.
​2023
​Khan K, Lustig G, Römer C, Reedoy K, Jule Z, Karim F, Ganga Y, Bernstein M, Baig Z, Jackson L, Mahlangu B, Mnguni A, Nzimande A, Stock N, Kekana D, Ntozini B, van Deventer C, Marshall T, Manickchund N, Gosnell BI, Lessells RJ, Abdool Karim Q, Abdool Karim SS, Moosa MS, de Oliveira T, von Gottberg A, Wolter N, Neher RA, Sigal A. Evolution and neutralization escape of the SARS-CoV-2 BA.2.86 subvariant. Nature Communications. 2023 December;14(1):8078. doi: 10.1038/s41467-023-43703-3.  PMC10700484.
​2023
​Gandhi RT, Castle AC, de Oliveira T, Lessells RJ. Case 40-2023: A 70-Year-Old Woman with Cough and Shortness of Breath. New England Journal of Medicine. 2023 December;389(26):2468-2476. doi: 10.1056/NEJMcpc2300910. PMID: 38157503.
​2023
​Adeniji AA, Ayangbenro AS, Babalola OO. Draft genome sequence of active gold mine isolate Pseudomonas iranensis strain ABS_30. Microbiology Resource Announcements. 2023 December;12(12):e0084923. doi: 10.1128/MRA.00849-23. Epub 2023 Nov 15. PMID: 37966236; PMCID: PMC10720498.
​2023
​Trickey A, Johnson LF, Fung F, Bonifacio R, Iwuji C, Biraro S, Bosomprah S, Chirimuta L, Euvrard J, Fatti G, Fox MP, Von Groote P, Gumulira J, Howard G, Jennings L, Kiragga A, Muula G, Tanser F, Wagener T, Low A, Vickerman P. Associations of inter-annual rainfall decreases with subsequent HIV outcomes for persons with HIV on antiretroviral therapy in Southern Africa: a collaborative analysis of cohort studies. BMC Infectious Diseases 2023 Dec 19;23(1):889. doi: 10.1186/s12879-023-08902-9. PMID: 38114912; PMCID: PMC10731689.
​2023